TMAP(Torrent Mapping Alignment Program)

Tools/Bio Tools

변익수 2013. 6. 5. 14:10

URL : http://github.com/iontorrent/tmap

$ git clone git://github.com/iontorrent/TMAP.git

Cloning into 'TMAP'...

remote: Counting objects: 11934, done.

remote: Compressing objects: 100% (2567/2567), done.

remote: Total 11934 (delta 9373), reused 11917 (delta 9356)

Receiving objects: 100% (11934/11934), 11.22 MiB | 2.94 MiB/s, done.

Resolving deltas: 100% (9373/9373), done.

$ cd TMAP

$ git submodule init

Submodule 'src/samtools' (http://github.com/nh13/samtools.git) registered for path 'src/samtools'

$ git submodule update

Cloning into 'src/samtools'...

remote: Counting objects: 5270, done.

remote: Compressing objects: 100% (2435/2435), done.

remote: Total 5270 (delta 2947), reused 5115 (delta 2825)

Receiving objects: 100% (5270/5270), 4.10 MiB | 1.71 MiB/s, done.

Resolving deltas: 100% (2947/2947), done.

Submodule path 'src/samtools': checked out 'e783ea96f068c99abb1f071c0c34fd9e10d34ce7'

$ git checkout -b 3.0.1 tmap.3.0.1

M src/samtools

Switched to a new branch '3.0.1'

$ git submodule update

Submodule path 'src/samtools': checked out '2c748fb1381cfc41f970e27a68a927ddc497a8ac'

autoconf, automake, m4 등 설치 => http://isbyeon.tistory.com/258

$ export PATH=/share/apps/autoconf-2.69/bin/:/share/apps/m4-1.4.16/bin/:/share/apps/automake-1.13/bin/:/share/apps/libtool-2.4/bin/:$PATH

$ sh autogen.sh

running: aclocal

running: autoheader

running: automake -a

running: autoconf

$ ./configure --prefix=/home/isbyeon/TMAP && make -j 8 && make install