BIOPerl 설치

다운로드 : http://bioperl.org

설치1 : 소스 컴파일

isbyeon # wget http://bioperl.org/DIST/BioPerl-1.6.1.tar.bz2

isbyeon # tar jxvfp BioPerl-1.6.1.tar.bz2

isbyeon # cd BioPerl-1.6.1

isbyeon # perl Build.PL

isbyeon # ./Build install

설치2 : cpan

isbyeon # perl -MCPAN -e shell

cpan> d /bioperl/

Distribution    BOZO/Fry-Lib-BioPerl-0.15.tar.gz

Distribution    CJFIELDS/BioPerl-1.6.1.tar.gz

Distribution    CJFIELDS/BioPerl-1.6.901.tar.gz

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9 items found

cpan> install CJFIELDS/BioPerl-1.6.1.tar.gz

설치 확인 :

isbyeon # cpan

cpan> i BioPerl

Fetching with LWP:

ftp://cpan.sarang.net/CPAN/authors/id/C/CR/CRAFFI/Bundle-BioPerl-2.1.8.tar.gz

Fetching with LWP:

ftp://cpan.sarang.net/CPAN/authors/id/C/CR/CRAFFI/CHECKSUMS

Checksum for /home/isbyeon/.cpan/sources/authors/id/C/CR/CRAFFI/Bundle-BioPerl-2.1.8.tar.gz ok

Scanning cache /home/isbyeon/.cpan/build for sizes

............................................................................DONE

Bundle id = Bundle::BioPerl

    CPAN_USERID  CRAFFI (Chris Dagdigian <dag@sonsorol.org>)

    CPAN_VERSION 2.001008

    CPAN_FILE    C/CR/CRAFFI/Bundle-BioPerl-2.1.8.tar.gz

    UPLOAD_DATE  2006-11-18

    MANPAGE      Bundle::BioPerl - A bundle to install external CPAN modules used by BioPerl 1.5.2

    CONTAINS     Ace Bio::ASN1::EntrezGene Class::AutoClass Clone Convert::Binary::C Data::Stag::Writer DBD::mysql GD::SVG GD Graph::Directed HTML::Parser HTTP::Request::Common LWP::UserAgent Set::Scalar SOAP::Lite Spreadsheet::ParseExcel Storable SVG SVG::Graph Text::Shellwords XML::DOM::XPath XML::Parser::PerlSAX XML::SAX XML::SAX::Base XML::SAX::Writer XML::Simple XML::Twig XML::Writer

    INST_FILE    /home/isbyeon/.cpan/Bundle/BioPerl.pm

    INST_VERSION 2.1.8