generate_dockerfile.sh

#!/bin/bash

 

# current uid and gid

curr_uid=`id -u`

curr_gid=`id -g`

curr_uname=`id -un`

 

# create bb.dockerfile:

cat << EOF1 > Dockerfile

FROM centos:centos7.7.1908

MAINTAINER Iksu Byeon (isbyeon@kribb.re.kr)

EOF1

echo ARG UNAME=${curr_uname} >> Dockerfile

echo ARG UID=${curr_uid} >> Dockerfile

echo ARG GID=${curr_gid} >> Dockerfile

 

cat << EOF2 >> Dockerfile

RUN PATH=$PATH:/sbin/:/usr/sbin:/usr/bin:/bin:

RUN yum -y install bzip2 time wget make gcc zlib-devel

RUN mkdir /apps

RUN cd /apps && \

wget http://downloads.sourceforge.net/project/bio-bwa/bwa-0.7.15.tar.bz2 --no-check-certificate && \

tar xvf bwa-0.7.15.tar.bz2 && \

cd bwa-0.7.15 && \

make && \

mv bwa /usr/bin/

 

RUN groupadd -g \$GID \$UNAME

RUN useradd -m -u \$UID -g \$GID -s /bin/bash \$UNAME

USER \$UNAME

CMD /bin/bash

EOF2

 

#docker build -f dockerfile.1 -t testimg .