BLAST Ring Image Generator (BRIG)

홈페이지 : http://brig.sourceforge.net/

테스트셋 : http://sourceforge.net/projects/brig/files/ > BRIG_examples.zip

 

1. 환경설정

$ cat ~/.bash_profile

PATH=${PATH}:/BiO/apps/blast/bin/

export PATH

$ source ~/.bash_profile

$ which blastn

/BiO/apps/blast/bin/blastn

$ java -version

java version "1.7.0_11"
Java(TM) SE Runtime Environment (build 1.7.0_11-b21)
Java HotSpot(TM) 64-Bit Server VM (build 23.6-b04, mixed mode)

 

2. 설치

$ mkdir BRIG_TEST

$ cd BRIG_TEST

$ wget http://sourceforge.net/projects/brig/files/latest/download?source=files

$ unzip BRIG-0.95-dist.zip

$ cd BRIG-0.95-dist

 

3. 테스트

$ wget http://sourceforge.net/projects/brig/files/BRIG_examples.zip/download

$ unzip BRIG_examples.zip

$ cd /home/isbyeon/BRIG_TEST/BRIG-0.95-dist

$ java -Xmx1500M -jar BRIG.jar

 

 Reference / Database sequence: > Browse
/home/isbyeon/BRIG_TEST/BRIG_examples/Chapter5_6_8_wholeGenomeExamples/BRIGExample.fna

Query sequences folder: > Browse
/home/isbyeon/BRIG_TEST/BRIG_examples/Chapter5_6_8_wholeGenomeExamples/E_coli_CFT073.fna > Add to data pool

Output folder > Browse
/home/isbyeon/BRIG_TEST/output

Next

 

BRIG_examples/Chapter5_6_8_wholeGenomeExamples/E_coli_CFT073.fna 선택 > Add new ring > legend text 2 : test

Add data

Next

Submit

 

BRIGExample.fna.jpg - 결과 이미지 파일