[BioTools] mrsFAST: micro-read substitution-only Fast Alignment Search Tool

홈페이지 : http://mrsfast.sourceforge.net/Home
다운로드 : http://sourceforge.net/projects/mrsfast/files/

# unzip mrsfast-2.6.0.4.zip
# cd mrsfast-2.6.0.4
# make mrsfast

cc -O2 -s    -c -o baseFAST.o baseFAST.c
cc -O2 -s    -c -o MrsFAST.o MrsFAST.c
cc -O2 -s    -c -o Common.o Common.c
cc -O2 -s    -c -o CommandLineParser.o CommandLineParser.c
cc -O2 -s    -c -o RefGenome.o RefGenome.c
cc -O2 -s    -c -o HashTable.o HashTable.c
cc -O2 -s    -c -o Reads.o Reads.c
cc -O2 -s    -c -o Output.o Output.c
gcc baseFAST.o MrsFAST.o Common.o CommandLineParser.o RefGenome.o HashTable.o Reads.o Output.o -o mrsfast -s -static -lz -lm
/usr/bin/ld: cannot find -lz
collect2: ld returned 1 exit status
make: *** [mrsfast] Error 1

 

 

 

### Rocks repository에서는 zlib-static이 없으므로 base에서 zlib zlib-devel zlib-static을 모두 업데이트

# yum install --enablerepo=base zlib zlib-devel zlib-static

 

# make mrsfast

gcc baseFAST.o MrsFAST.o Common.o CommandLineParser.o RefGenome.o HashTable.o Reads.o Output.o -o mrsfast -s -static -lz -lm
/usr/bin/ld: cannot find -lm
collect2: ld returned 1 exit status
make: *** [mrsfast] Error 1

 

# yum install glibc-static

# make mrsfast

 

# ls -l mrsfast
-rwxrwxr-x 1 root root 921400 Jan  3 09:51 mrsfast