gdc-client centos 7

$ conda create -n gdc_python3 python=3.6.10 libxml2 libxslt libffi gcc six requests progressbar2 intervaltree termcolor jsonschema pyyaml lxml
$ conda activate gdc_python3
$ conda install -c psi4 gcc-5
$ git clone https://github.com/NCI-GDC/gdc-client
$ cd gdc-client
$ pip install -r requirements.txt
$ pip install --ignore-installed PyYAML
$ python setup.py install
$ pip install -r dev-requirements.txt
$ cd bin
$ ./gdc-client download 258ed4d7-25f1-4da9-810f-7df9ca5e6638 -t gdc-user-token.~~~~~_chmod.txt --log-file LOG_FILE.txt

 

or

 

$ ./gdc-client download -m gdc_manifest.2020-03-10.txt -t gdc-user-token.~~~~~_chmod.txt --log-file LOG_FILE.txt

 

 

https://portal.gdc.cancer.gov/projects에서 Manifest 파일 다운로드, token 필요