Tools/Bio Tools 검색 결과
33 개의 검색 결과가 있습니다.
Tools/Bio Tools

FASTX-Toolkit

1. Install libgtextutils# cd /usr/local/src# wget http://hannonlab.cshl.edu/fastx_toolkit/libgtextutils-0.6.1.tar.bz2# tar jxvfp libgtextutils-0.6.1.tar.bz2# cd libgtextutils-0.6.1# ./configure && make && make install# cat > /etc/profile.d/fastx_toolkit.sh#!/bin/bashexport GTEXTUTILS_LIBS="-I/usr/local/lib"export GTEXTUTILS_CFLAGS="-I/usr/local/include/gtextutils"# chmod 755 /etc/profile.d/fastx..

2012. 10. 9. 16:06
Tools/Bio Tools

Galaxy 설치

0. OS 설치 http://ctrlcv.co.cc/entry/CentOSX8664-62-설치 1. galaxy 사용자 생성 root # useradd galaxy root # passwd galaxy 2. virtualenv 설치 root # easy_install pip root # pip install virtualenv 3. Mercurial Distributed SCM 설치 root # yum -y install mercurial 4. Galaxy 기본 설치 root # mkdir /share/apps/galaxy-dist root # chown -R galaxy.galaxy /share/apps/galaxy-dist root # su - galaxy galaxy $ cd /share/apps ..

2012. 6. 6. 13:13
Tools/Bio Tools

Cufflinks 설치

1. Installing Boost http://isbyeon.tistory.com/entry/Boost-C-Libraries-%EC%84%A4%EC%B9%98 2. Installing the SAM tools http://isbyeon.tistory.com/entry/SAMtools-%EC%84%A4%EC%B9%98 3. Installing the Eigen libraries 다운로드 : http://eigen.tuxfamily.org/index.php?title=Main_Page 설치 : 방법1) # wget http://bitbucket.org/eigen/eigen/get/3.1.2.tar.bz2 # tar jxvfp 3.1.2.tar.bz2 # export CFLAGS="-I/usr/local/s..

2012. 6. 4. 16:58
Tools/Bio Tools

TopHat 설치

1. Download and extract the latest Bowtie 2 (or Bowtie) releases.http://ctrlcv.co.cc/entry/bowtie-%EC%84%A4%EC%B9%98 2. Installing Boosthttp://ctrlcv.co.cc/entry/Boost-C-Libraries-%EC%84%A4%EC%B9%98 3. Installing the SAM toolshttp://ctrlcv.co.cc/entry/SAMtools-%EC%84%A4%EC%B9%98 4. Building TopHat다운로드 : http://tophat.cbcb.umd.edu/설치 : # cd /usr/local/src# wget http://tophat.cbcb.umd.edu/download..

2012. 6. 4. 15:48
Tools/Bio Tools

SAMtools 설치

다운로드 : http://sourceforge.net/projects/samtools/files/설치 :# cd /usr/local/src# wget http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2/download# tar jxvfp samtools-0.1.18.tar.bz2 # cd samtools-0.1.18# make# mkdir -p /usr/local/bam/lib# mkdir -p /usr/local/bam/include/bam# cp libbam.a /usr/local/bam/lib/# cp *.h /usr/local/bam/include/bam/# mv /usr/local/src/sa..

2012. 6. 4. 15:22
Tools/Bio Tools

Boost C++ Libraries 설치

다운로드 : http://www.boost.org/BOOST 1.49.0 Library documentation : http://www.boost.org/doc/libs/1_49_0/설치 :# yum install icu libicu.x86_64 libicu-devel.x86_64 libicu-doc.x86_64# cd /usr/local/src# wget http://sourceforge.net/projects/boost/files/boost/1.49.0/boost_1_49_0.tar.bz2/download# tar jxvfp boost_1_49_0.tar.bz2# cd boost_1_49_0# ./bootstrap.sh --prefix=/usr/local/boost_1_49_0 --with-libra..

2012. 6. 4. 15:16