Boost C++ Libraries 설치

다운로드 : http://www.boost.org/BOOST 1.49.0 Library documentation : http://www.boost.org/doc/libs/1_49_0/설치 :# yum install icu libicu.x86_64 libicu-devel.x86_64 libicu-doc.x86_64# cd /usr/local/src# wget http://sourceforge.net/projects/boost/files/boost/1.49.0/boost_1_49_0.tar.bz2/download# tar jxvfp boost_1_49_0.tar.bz2# cd boost_1_49_0# ./bootstrap.sh --prefix=/usr/local/boost_1_49_0 --with-libra..

bowtie 설치

0. 다운로드 : http://bowtie-bio.sourceforge.net/index.shtml1. 설치 :# cd /usr/local/src# wget http://sourceforge.net/projects/bowtie-bio/files/bowtie/0.12.8/bowtie-0.12.8-linux-x86_64.zip/download# unzip bowtie-0.12.8-linux-x86_64.zip # mv /usr/local/src/bowtie-0.12.8 /usr/local# echo "export PATH=/usr/local/bowtie-0.12.8/:\$PATH" >> /etc/profile# source /etc/profile# which bowtie/usr/local/bowtie-0.1..

BWA 설치

0. 다운로드 : http://bio-bwa.sourceforge.net/ 1. 설치 : # cd /usr/local/src/ # wget http://sourceforge.net/projects/bio-bwa/files/bwa-0.5.9.tar.bz2/download # tar -jxvf bwa-0.5.9.tar.bz2 # cd bwa-0.5.9 # make# cd# mv /usr/local/src/bwa-0.5.9 /usr/local # echo "export PATH=/usr/local/bwa-0.5.9/:\$PATH" >> /etc/profile# source /etc/profile # which bwa /usr/local/bwa-0.5.9/bwa

BiO Tools

Integrated solutions- CLCbio Genomics Workbench- Galaxy - Genomatix- JMP Genomics- NextGENe- SeqMan Genome Analyser - SHORE - SlimSearch Align/Assemble to a reference- PerM- BFAST- Bowtie- BWA- ELAND- Exonerate- GenomeMapper - GMAP- gnumap- MAQ- MOSAIK- MrFAST and MrsFAST - MUMmer- Novocraft- PASS- RMAP- SeqMap- SHRiMP- Slider- SOAP- SSAHA- SOCS- SWIFT- SXOligoSearch- Vmatch- Zoom De novo Align/..

RPM(Redhat Package Manager) 사용 방법

YUM(Yellowdog Updater,Modified)